Index _ | C | D | E | F | G | H | L | M | N | P | S | T | X _ __init__() (lynx.dataset.HeteroDataset method) (lynx.dataset.XeniumDataset method) (lynx.model.HeteroAttnVGAE method) C compute_pseudotime() (in module lynx.trajectory) construct_graph() (lynx.dataset.XeniumDataset method) construct_hetero_graph() (lynx.dataset.HeteroDataset method) D disp_heatmap() (in module lynx.plot) disp_joint_logfc() (in module lynx.plot) disp_kde_scatter() (in module lynx.plot) disp_spatial_latents() (in module lynx.plot) disp_stacked_dynamics() (in module lynx.plot) disp_trajectory() (in module lynx.plot) E evaluate() (lynx.model.HeteroAttnVGAE method) F filter_cells() (in module lynx.io) fit() (lynx.model.HeteroAttnVGAE method) G get_binned_expr() (in module lynx.utils) get_cell_projections() (in module lynx.trajectory) get_celltype_dynamics() (in module lynx.utils) get_cluster_dynamics() (in module lynx.utils) get_curve() (in module lynx.trajectory) get_neighbors() (lynx.dataset.XeniumDataset static method) get_test_associations() (in module lynx.test_assoc) get_tree() (in module lynx.trajectory) get_zonation_features() (in module lynx.utils) get_zonations() (in module lynx.utils) guide() (lynx.model.HeteroAttnVGAE method) H HeteroAttnVGAE (class in lynx.model) HeteroDataset (class in lynx.dataset) L load_ab_stain() (in module lynx.io) load_annot_tiffs() (in module lynx.io) load_spatial_metadata() (in module lynx.io) load_xenium() (in module lynx.io) M model() (lynx.model.HeteroAttnVGAE method) N netVisual_circle() (in module lynx.plot) P predict() (lynx.model.HeteroAttnVGAE method) prune_tree() (in module lynx.trajectory) S save_annot_tifs() (in module lynx.io) set_model_configs() (in module lynx.config) set_train_configs() (in module lynx.config) sort_fitted_expr() (in module lynx.utils) sort_nodes() (in module lynx.trajectory) summarize_cell_interaction() (in module lynx.plot) T test_cci() (in module lynx.test_assoc) test_trajectory() (in module lynx.test_assoc) X XeniumDataset (class in lynx.dataset)