lynx.test_assoc.test_trajectory

lynx.test_assoc.test_trajectory(df, dof=5, degree=3, likelihood='gaussian')

Tests if gene expression significantly affected by

(1). trajectory (t); (2). sex

Parameters:

• df (pd.DataFrame) – DataFrame with expression, sample_id, sex, and t columns

• dof (int) – Degrees of freedom for B-spline basis

• degree (int) – Degree of B-spline

• likelihood (str) – ‘gaussian’ for mixed linear models (default) ‘gamma’ for Gamma GLM