lynx.test_assoc.test_cci

lynx.test_assoc.test_cci(adata, cci_df, cluster_labels, cluster_key='cell_type', n_bins=50)

Post-hoc paired t-test for significant CCI against cell-type abundance

Parameters:

• adata (anndata.AnnData)

• cci_df (DataFrame)

• cluster_labels (List[str])

• cluster_key (str)

• n_bins (int)