lynx.io.save_annot_tifs¶

lynx.io.save_annot_tifs(annot_imgs, path, verbose=True)[source]¶

Save a list of multi-channel images as annotated OME-TIFF files

Parameters:

annot_imgs (dict[str, dict[str, np.ndarray]]) – Annotated images as dictionary Outer key: file name for each tiff img Inner key: channel IDs Value: 2-D image pixel intensities
path (str) – Output directory